Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015939284.1_cds_XP_016483942.1_75005
CDS Infomation

[gene=LOC107804545] [db_xref=GeneID:107804545] [protein=polygalacturonase At1g48100-like] [protein_id=XP_016483942.1] [location=join(14998..15393,15984..16151,16292..16336,16425..16632,16738..16822,17103..17610)] [gbkey=CDS]
Sequence

ATGGCATCGCTATCAACCCGTGTGCCAGTACTGCTTGTCATTTTTTATATGACAGTAGTT
GCATTTTTCATGGTTTTATTATGCAGCCATAATGTTACTGCTAGATATCATCACCACGGC
CACCGCGGCCATCACAATAAGAAACATTCCCACATATCATATCCGCCTTCTATTCCACCT
GAGCCTTCTAACCCACCCGCAGACGAAGGGGTTTATGATGTGAGGTCGTTTGGGGCTGTA
GGAGATGGCATTGTAGATGACACTGAAGCTTTCAAAGCAGCGTGGGATGCCGCTTGTCAA
GTCGAGTCAGCAGTCATCTTCGTTCCCTTTGGTTATTCTTTCATGATCCAATCCACTATT
TTTACTGGTCCCTGTCAAAGTGGTTTGGTCTTTCAGCTGGAAGGAACAATAATGCCACCA
GATGGACCAGAGTCGTGGCCGGGCAACAACAGCAGGCGGCAGTGGCTGGTTTTCTATAGA
GTTGATGAGTTGTCACTGCAAGGCGGAGGCGTCATAGATGGAAGGGGAGAACAGTGGTGG
AATCTGCCCTGCAAACCGCATAAGGGACCTAATGGAAGTACACTGCCTGGACCATGTGAC
AGCCCAATTGCCATTAGATTCTTCATGAGCTCAAATCTAACGGTGGAAGGAATTAGAATG
CAGAATAGTCCACAATTTAATTTTAGATTTGATAACTGCAAGAATGTGCATATAGAATCC
CTACACATTACAGCTCCAGCCTGGAGTCCCAACACTGATGGTATTCACATAGAGCAGACC
ACCAATGTTGAAATTTACGATTCACTCATCTCTAATGGTGATGATTGTGTATCAATAGGG
GCAGGATGTCACGATGTGGATATTAGGAATCTCACATGTGGACCTGGAGGTCATGGAATC
AGCATTGGGAGTTTAGGCAACCACAATTCGCGAGCATGCGTATCAAACATTACAGTGACG
GACTCAGTGATAAAGGAATCAGATAATGGAGTGAGGATCAAGACATGGCAAGGTGGTTAT
GGAGCAGTATCTGGAATTTCCTTCCTTAAAATTCACATGGACAACGTAAGGAATCCCATA
ATAATAGACCAATTCTACTGCCTCTCAAAAGAATGCAGCAACCGCACCTCAGCAGTGTCC
GTTTCGGACATTGAATACTCTAGCATAAAAGGAACATATGATATTAGAAGTCCGCCAATG
CATTTTGCTTGTAGTGACACTATTCCCTGCACTAACATAACACTTTCGGACATAGAACTT
CTGCCTGCTCAAGGTGACTTAGTGTTGGATCCGTTTTGCTGGAACGTATATGGTGGACAA
GAGACGTTAACTATTCCGCCTATTTTCTGCTTGTTAGAGGGCAATCCTCCAGCAGTGTTT
GAAAATAATGACTTGGGCTATTGCTCGTGA

Peptide Sequence

PEP ID

XP_016483942.1
PEP Infomation

PREDICTED: polygalacturonase At1g48100-like [Nicotiana tabacum]
Sequence

MASLSTRVPVLLVIFYMTVVAFFMVLLCSHNVTARYHHHGHRGHHNKKHSHISYPPSIPP
EPSNPPADEGVYDVRSFGAVGDGIVDDTEAFKAAWDAACQVESAVIFVPFGYSFMIQSTI
FTGPCQSGLVFQLEGTIMPPDGPESWPGNNSRRQWLVFYRVDELSLQGGGVIDGRGEQWW
NLPCKPHKGPNGSTLPGPCDSPIAIRFFMSSNLTVEGIRMQNSPQFNFRFDNCKNVHIES
LHITAPAWSPNTDGIHIEQTTNVEIYDSLISNGDDCVSIGAGCHDVDIRNLTCGPGGHGI
SIGSLGNHNSRACVSNITVTDSVIKESDNGVRIKTWQGGYGAVSGISFLKIHMDNVRNPI
IIDQFYCLSKECSNRTSAVSVSDIEYSSIKGTYDIRSPPMHFACSDTIPCTNITLSDIEL
LPAQGDLVLDPFCWNVYGGQETLTIPPIFCLLEGNPPAVFENNDLGYCS

Transcript Sequence

Gene sequence data has not been registered.